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Animal & Plant Cells Under the Microscope

Exam code: 5090
Written by: Ashika|Reviewed by: Caroline Carroll|Updated 2 July 2026

Examining Cells Under the Microscope

Examining Cells Under the Microscope

Viewing cells under the microscope

  • Many biological structures are too small to be seen by the naked eye

  • Optical microscopes are an invaluable tool for scientists as they allow for tissues, cells and larger organelles to be seen and studied

  • Light is directed through a thin layer of biological material that is supported on a glass slide

  • This light is focused through several lenses so that an image is visible through the eyepiece

  • Getting a visible image requires a very thin sample of biological tissue because light has to pass through the sample and into the lenses of the microscope

  • The most common specimens to observe under a light microscope are cheek cells (animal cells) and onion cells (plant cells)

  • A stain is often used to ensure cell structures are clearly visible under the microscope

General method

  • Specimens must be prepared on a microscope slide to be observed under a light microscope

  • This must be done carefully to avoid damaging the biological specimen and the structures within it

  • Preparing a slide using a liquid specimen:

    • Add a few drops of the sample to the slide using a pipette

    • Cover the liquid/smear with a coverslip and gently press down to remove air bubbles

    • Wear gloves to ensure there is no cross-contamination of foreign cells

  • Preparing a slide using a solid specimen:

    • Use scissors to cut a small sample of the tissue

    • Peel away or cut a very thin layer of cells from the tissue sample to be placed on the slide (using a scalpel or forceps)

    • Some tissue samples need to be treated with chemicals to kill/make the tissue rigid

    • Gently place a coverslip on top and press down to remove any air bubbles

    • A stain may be required to make the structures visible depending on the type of tissue being examined

      • Commonly used stains include methylene blue to stain cheek cells and iodine to stain onion cells

    • Take care when using sharp objects and wear gloves to prevent the stain from dying your skin

  • When using an optical microscope always start with the lowest power objective lens:

    • It is easier to find what you are looking for in the field of view

    • This helps to prevent damage to the lens or coverslip in case the stage has been raised too high

  • Preventing the dehydration of tissue:

    • The thin layers of material placed on slides can dry up rapidly

    • Adding a drop of water to the specimen (beneath the coverslip) can prevent the cells from being damaged by dehydration

  • Unclear or blurry images:

    • Switch to the lower power objective lens and try using the coarse focus to get a clearer image

    • Consider whether the specimen sample is thin enough for light to pass through to see the structures clearly

    • There could be cross-contamination with foreign cells or bodies

Diagram of a labelled microscope with usage instructions for viewing a specimen. Includes labelled parts and step-by-step guidance for focusing.
Light microscopes have a lens in the eyepiece which is fixed and two or three objective lenses of different powers

Viewing plant tissue

  • An ideal tissue is the onion epidermis (found between the layers of onions) because it forms a layer just one cell thick

    • Being a non-photosynthetic tissue, onion epidermis is not green as it does not contain any chloroplasts

Apparatus

  • The key components of an optical microscope you will need to use are:

    • The eyepiece lens

    • The objective lenses

    • The stage

    • The light source

    • The coarse and fine focus

  • Other apparatus used:

    • Forceps

    • Scissors

    • Scalpel

    • Coverslip

    • Slides

    • Pipette

    • Iodine solution 

Viewing onion cells under the microscope diagram

Preparing a Slide to view plant cells

Care must be taken to avoid smudging the glass slide or trapping air bubbles under the coverslip

Viewing animal tissue

  • Human cheek cells are a good choice for examination under the light microscope because they are:

    • Plentiful

    • Easy to obtain safely

    • Can be obtained without an overly intrusive process

    • Relatively undifferentiated and so will display the main cell structures

Safety considerations

  • Do not perform the sampling on a person who has a cold, cough, throat infection etc.

    • To avoid spreading the infection to others

  • Concentrated methylene blue is toxic if ingested

    • Wear gloves and do NOT allow children to handle methylene blue solution or have access to the bottle of solution

Apparatus

  • Glass microscope slides

  • Cover slips

  • Paper towels or tissue

  • Staining solution

    • Methylene blue solution

      • 0.5% to 1% 

      • Dilute according to concentration of the stock solution

  • Plastic pipette or dropper

  • Sterile, individually packed cotton wool buds or swabs

Method

  • Brush teeth thoroughly with normal toothbrush and toothpaste

    • This removes bacteria from teeth so they don't obscure the view of the cheek cell

  • Take a clean, sterile cotton swab and gently scrape the inside cheek surface of the mouth for 5-10 seconds

  • Smear the cotton swab on the centre of the microscope slide for 2 to 3 seconds

  • Add a drop of methylene blue solution

  • Place a coverslip on top

    • Lay the coverslip down at one edge and then tilt it down flat

      • This reduces bubble formation under the coverslip

  • Absorb any excess solution by allowing a paper towel to touch one side of the coverslip.

  • Place the slide on the microscope, with 4 x or 10 objective in position and find a cell

  • Then view at higher magnification to reveal more detail

  • Methylene blue stains negatively charged molecules in the cell, including DNA and RNA

    • This causes the nucleus and mitochondria appear darker than their surroundings

  • The cells seen are squamous epithelial cells from the outer epithelial layer of the mouth

Viewing cheek cells under the microscope diagram

cheek-cell-slide-microscopy

Parts of the cell that can be seen with a light microscope

  • Nucleus

  • Mitochondria

  • Cell membrane

  • Cytoplasm

Parts of the cell that cannot be seen with a light microscope

  • Ribosomes*

  • Endoplasmic reticulum*

  • Golgi*

  • Details of the nucleus, mitochondria and cell membrane

* these are parts of the cell that you don't need to know the names of, but they are included here as examples of very small structures within the cell

Animal & Plant Cells Under the Microscope · Revision Notes · Biology · StudyDeck